Transcriptome of Japanese medaka adult tissues

Experiment ID:DRP008259
Technology:RNA-Seq
Description:In order to investigate the regulatory properties that contribute to the stability and evolutionary conservation of gene expression, we focused on pleiotropic expression. To determine the number of tissues in which each gene was expressed, we collected transcriptome data for tissues of adult medaka fish (O. latipes). We selected a total of 25 different tissues to cover as much of the body as possible. A total of four replicates were obtained for each tissue, two from males and two from females. Each data was derived from one individual, not pooled. We found a moderate tendency that genes expressed in many tissues are less likely to fluctuate in expression levels among individuals and more likely to be evolutionarily conserved in expression levels.
Source:DRP008259 DDBJ
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Bulk RNA-Seq processed expression values in Oryzias latipes

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX298718UBERON:0002535 gillgillUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired98520397750750001990321892.5Browse results
DRX298719UBERON:0002535 gillgillUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1339987710371733002060022260Browse results
DRX298720UBERON:0002535 gillgillUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired119480479445636001971821793.5Browse results
DRX298721UBERON:0002535 gillgillUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired125816269983157002022122065.5Browse results
DRX298722UBERON:0000948 heartheartUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired108512898703520001916421520.5Browse results
DRX298723UBERON:0000948 heartheartUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired89995067059416002088722390.5Browse results
DRX298724UBERON:0000948 heartheartUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1297043210065349001972221825Browse results
DRX298725UBERON:0000948 heartheartUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1839485515166325002020722064.5Browse results
DRX298726UBERON:0002028 hindbrainhindbrainUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired125180749102888002090122415.5Browse results
DRX298727UBERON:0002028 hindbrainhindbrainUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired95660306898250002069822303.5Browse results
DRX298728UBERON:0002028 hindbrainhindbrainUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired113710828146963002096022447Browse results
DRX298729UBERON:0002028 hindbrainhindbrainUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired118780648570192002100422470.5Browse results
DRX298730UBERON:0001046 hindguthindgutUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired82713186715758001920221560Browse results
DRX298731UBERON:0001046 hindguthindgutUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1562156912892039002010122027Browse results
DRX298732UBERON:0001046 hindguthindgutUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1486196212081589001946121697Browse results
DRX298733UBERON:0001046 hindguthindgutUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1317485810708353001974921837.5Browse results
DRX298734UBERON:0002113 kidneykidneyUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1302035210655132002029822108.5Browse results
DRX298735UBERON:0002113 kidneykidneyUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired95506617591599002039622168.5Browse results
DRX298736UBERON:0002113 kidneykidneyUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired2283240318486000002057922258.5Browse results
DRX298737UBERON:0002113 kidneykidneyUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1553214812030651002018522050.5Browse results

Showing 41 to 60 of 100 entries

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