Transcriptome of Japanese medaka adult tissues

Experiment ID:DRP008259
Technology:RNA-Seq
Description:In order to investigate the regulatory properties that contribute to the stability and evolutionary conservation of gene expression, we focused on pleiotropic expression. To determine the number of tissues in which each gene was expressed, we collected transcriptome data for tissues of adult medaka fish (O. latipes). We selected a total of 25 different tissues to cover as much of the body as possible. A total of four replicates were obtained for each tissue, two from males and two from females. Each data was derived from one individual, not pooled. We found a moderate tendency that genes expressed in many tissues are less likely to fluctuate in expression levels among individuals and more likely to be evolutionarily conserved in expression levels.
Source:DRP008259 DDBJ
Download:
Bulk RNA-Seq processed expression values in Oryzias latipes

List of assays

Show

entries

Showing 81 to 100 of 100 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX298758UBERON:0000151 pectoral finpecfinUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1687904013465972002001221972.5Browse results
DRX298759UBERON:0000151 pectoral finpecfinUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired94089817520464001859021244Browse results
DRX298760UBERON:0000151 pectoral finpecfinUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1457863011649057001942521662Browse results
DRX298761UBERON:0000151 pectoral finpecfinUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1335822810551073001951921726Browse results
DRX298762UBERON:0002240 spinal cordspinalcordUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired122022369078456002136722655.5Browse results
DRX298763UBERON:0002240 spinal cordspinalcordUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired2620663019824413002200122985.5Browse results
DRX298764UBERON:0002240 spinal cordspinalcordUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired2080985615807132002138622680Browse results
DRX298765UBERON:0002240 spinal cordspinalcordUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired122596629066485002082022373Browse results
DRX298766UBERON:0002106 spleenspleenUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1598979913886104001967121791Browse results
DRX298767UBERON:0002106 spleenspleenUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1367223611373752001944421666Browse results
DRX298768UBERON:0002106 spleenspleenUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired108238618529976001899321463Browse results
DRX298769UBERON:0002106 spleenspleenUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired96014637659303001912821526.5Browse results
DRX298770UBERON:0003672 dentitionteethUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired88851727225510002013622020.5Browse results
DRX298771UBERON:0003672 dentitionteethUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired117032459437121002036922149.5Browse results
DRX298772UBERON:0003672 dentitionteethUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1385157311051878002052922226.5Browse results
DRX298773UBERON:0003672 dentitionteethUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired57442904331612001987321863.5Browse results
DRX298774UBERON:0000152 pelvic finventralfinUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired72472105765615001868421289Browse results
DRX298775UBERON:0000152 pelvic finventralfinUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired97399117760620001904321475.5Browse results
DRX298776UBERON:0000152 pelvic finventralfinUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired113813758972125001945921686.5Browse results
DRX298777UBERON:0000152 pelvic finventralfinUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired73699735702248001915621517.5Browse results

Showing 81 to 100 of 100 entries

This website requires cookies, and limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our privacy notice.
Do not show this banner again