Gene : ptx3.L - 100036916 - Xenopus laevis (African clawed frog)
General information
Gene identifier
100036916
Name
ptx3.L
Description
pentraxin 3 L homeolog
Synonym(s)
Orthologs
Paralogs
Expression
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entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| UBERON:0000948heart | 83.08 | 4.11e-7 | See source data | |
| UBERON:0001846internal ear | 72.22 | 1.72e-5 | See source data | |
| UBERON:0002385muscle tissue | 63.80 | 8.65e-5 | See source data | |
| UBERON:0000014zone of skin | 62.48 | 1.37e-6 | See source data | |
| UBERON:0001264pancreas | 49.47 | 4.05e-4 | See source data | |
| UBERON:0002048lung | 45.29 | 0.002 | See source data | |
| UBERON:0000160intestine | 40.10 | 0.004 | See source data | |
| UBERON:0000945stomach | 37.47 | 0.002 | See source data | |
| UBERON:0000019camera-type eye | 33.41 | 0.003 | See source data | |
| UBERON:0000955brain | 26.06 | 0.014 | See source data | |
| UBERON:0000473testis | 24.17 | 0.001 | See source data | |
| UBERON:0000922embryo | 23.15 | 8.46e-5 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Reported absence of expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| UBERON:0004734gastrula | 6.91 | 1 | See source data | |
| UBERON:0000307blastula | 9.23 | 1 | See source data | |
| CL:0000023oocyte | 15.03 | 1 | See source data | |
| UBERON:0000992ovary | 16.32 | 0.929 | See source data | |
| UBERON:0002113kidney | 21.05 | 0.067 | See source data | |
| UBERON:0002106spleen | 21.82 | 0.486 | See source data | |
| CL:0000025egg cell | 22.67 | 1 | See source data | |
| UBERON:0002107liver | 27.99 | 0.31 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Orthologs
Taxon Name | Species with orthologs | Gene(s) | Expression comparison | See details |
|---|---|---|---|---|
| Xenopus | 1 species | 1 gene | Compare expression | |
| Tetrapoda | 27 species | 27 genes | Compare expression | |
| Sarcopterygii | 28 species | 28 genes | Compare expression | |
| Euteleostomi | 39 species | 43 genes | Compare expression |
Paralogs (same species)
Taxon Name | Gene(s) | Expression comparison | See details |
|---|---|---|---|
| Xenopus | 1 gene | Compare expression |
Cross-references
RefSeq
Xenbase
EMBL
UniProtKB/TrEMBL