Xenopus laevis

Gene : tubb6.S - 379076 - Xenopus laevis (African clawed frog)

General information

Gene identifier

379076

Name

tubb6.S

Description

Tubulin beta chain

Synonym(s)

tubb6,XELAEV_18033612mg,MGC52834

Orthologs

Paralogs

Expression

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entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0000948heart94.261.08e-9See source data
RSCAIE
UBERON:0002048lung91.831.33e-8See source data
RSCAIE
UBERON:0002106spleen91.772.66e-8See source data
RSCAIE
UBERON:0000945stomach90.259.49e-9See source data
RSCAIE
UBERON:0002385muscle tissue90.053.58e-8See source data
RSCAIE
UBERON:0000160intestine89.461.27e-8See source data
RSCAIE
UBERON:0002113kidney89.259.78e-9See source data
RSCAIE
UBERON:0001846internal ear89.071.37e-7See source data
RSCAIE
UBERON:0001264pancreas86.251.42e-7See source data
RSCAIE
UBERON:0000473testis81.892.66e-8See source data
RSCAIE
UBERON:0000019camera-type eye80.495.54e-7See source data
RSCAIE
UBERON:0002107liver75.978.04e-6See source data
RSCAIE
UBERON:0004455neurula embryo72.396.94e-7See source data
RSCAIE
UBERON:0000955brain67.342.51e-5See source data
RSCAIE
UBERON:0000014zone of skin60.034.09e-5See source data
RSCAIE
CL:0000025egg cell59.296.77e-4See source data
RSCAIE
UBERON:0004734gastrula52.930.001See source data
RSCAIE
UBERON:0000307blastula51.405.95e-4See source data
RSCAIE
CL:0000023oocyte48.922.13e-4See source data
RSCAIE
UBERON:0000992ovary44.470.003See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

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entries

No reported absence of expression for this gene

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Xenopus

1 species

Xenopus tropicalis (western clawed frog)

1 gene

Compare expression
Tetrapoda

27 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus tropicalis (western clawed frog)
Compare expression
Sarcopterygii

28 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus tropicalis (western clawed frog)
Latimeria chalumnae (Coelacanth)
Compare expression
Euteleostomi

36 species

Homo sapiens (human)
Mus musculus (mouse)
Danio rerio (zebrafish)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus tropicalis (western clawed frog)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Gadus morhua (Atlantic cod)
Oryzias latipes (Japanese rice fish)
Gasterosteus aculeatus (Three-spined stickleback)
Latimeria chalumnae (Coelacanth)

36 genes

Compare expression

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
Xenopus

1 gene

446922 tubb6.L
Compare expression
Metazoa

11 genes

108700239 tubb
108711727 tubb4a.L
108715419 LOC108715419
108719115 tubb2b.L
379202 tubb4b.S
379220 tubb2
379359 tubb4a.S
380258 tubb4
380418 tubb
446922 tubb6.L
495319 tubb3.L
Compare expression
Opisthokonta

13 genes

108700239 tubb
108702641 LOC108702641
108711727 tubb4a.L
108715419 LOC108715419
108719115 tubb2b.L
379202 tubb4b.S
379220 tubb2
379359 tubb4a.S
379566 MGC69074
380258 tubb4
380418 tubb
446922 tubb6.L
495319 tubb3.L
Compare expression