Bos taurus

Gene : MYOD1 - ENSBTAG00000002216 - Bos taurus (cattle)

General information

Gene identifier

ENSBTAG00000002216

Name

MYOD1

Description

myogenic differentiation 1 [Source:VGNC Symbol;Acc:VGNC:31835]

Synonym(s)

Orthologs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0001401longissimus thoracis muscle84.821.41e-12See source data
RSCAIE
UBERON:0001477infraspinatus muscle82.602.96e-10See source data
RSCAIE
UBERON:0002385muscle tissue82.36<= 1.00e-14See source data
RSCAIE
UBERON:0001378rectus femoris81.749.82e-10See source data
RSCAIE
UBERON:0001375semitendinosus81.004.51e-14See source data
RSCAIE
UBERON:0001509triceps brachii79.637.76e-8See source data
RSCAIE
UBERON:0001381semimembranosus muscle79.371.63e-9See source data
RSCAIE
UBERON:0002512corpus luteum77.672.93e-9See source data
RSCAIE
UBERON:0002000gluteal muscle76.937.88e-8See source data
RSCAIE
UBERON:0001886choroid plexus76.918.15e-5See source data
RSCAIE
UBERON:0001134skeletal muscle tissue76.679.42e-14See source data
RSCAIE
UBERON:0001374biceps femoris75.954.30e-5See source data
RSCAIE
UBERON:0002383supraspinatus muscle74.968.68e-8See source data
RSCAIE
UBERON:0001371gluteus medius72.317.88e-8See source data
RSCAIE
UBERON:0001739laryngeal cartilage65.952.82e-6See source data
RSCAIE
UBERON:0000378tongue muscle64.873.78e-6See source data
RSCAIE
UBERON:0001111intercostal muscle46.445.66e-9See source data
RSCAIE
UBERON:0002371bone marrow43.680.019See source data
RSCAIE
UBERON:0001723tongue40.660.008See source data
RSCAIE
UBERON:0019143intramuscular adipose tissue34.650.001See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
CL:0000017spermatocyte12.771See source data
RSCAIE
UBERON:0001728nasopharynx13.221See source data
RSCAIE
UBERON:0001732pharyngeal tonsil13.561See source data
RSCAIE
UBERON:0010239spiral colon14.971See source data
RSCAIE
UBERON:0004804oviduct epithelium15.271See source data
RSCAIE
UBERON:0000014zone of skin15.291See source data
RSCAIE
UBERON:0002116ileum15.601See source data
RSCAIE
UBERON:0002247uterine horn16.321See source data
RSCAIE
UBERON:0015869retropharyngeal lymph node16.461See source data
RSCAIE
UBERON:0001044saliva-secreting gland16.621See source data
RSCAIE
UBERON:0000082adult mammalian kidney16.711See source data
RSCAIE
UBERON:0002196adenohypophysis17.131See source data
RSCAIE
UBERON:0002046thyroid gland17.151See source data
RSCAIE
UBERON:0002190subcutaneous adipose tissue17.181See source data
RSCAIE
UBERON:0007625pigment epithelium of eye17.191See source data
RSCAIE
UBERON:0012648ampulla of uterine tube17.201See source data
RSCAIE
UBERON:0005386olfactory segment of nasal mucosa17.341See source data
RSCAIE
UBERON:0000362renal medulla17.381See source data
RSCAIE
UBERON:0002369adrenal gland17.791See source data
RSCAIE
UBERON:0002115jejunum17.941See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Bovidae

2 species

Capra hircus (Goat)
Ovis aries (Sheep)
Compare expression
Artiodactyla

3 species

Compare expression
Laurasiatheria

7 species

Compare expression
Boreoeutheria

23 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Compare expression
Theria

24 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Amniota

27 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Anolis carolinensis (green anole)
Compare expression
Tetrapoda

28 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Anolis carolinensis (green anole)
Compare expression
Sarcopterygii

29 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Anolis carolinensis (green anole)
Latimeria chalumnae (Coelacanth)
Compare expression
Euteleostomi

40 species

Homo sapiens (human)
Mus musculus (mouse)
Danio rerio (zebrafish)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Anolis carolinensis (green anole)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)

Salmo salar (Atlantic salmon)



Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Latimeria chalumnae (Coelacanth)

46 genes

Compare expression
Orthology information comes from OMA : ENSBTAG00000002216.

Cross-references

Ensembl

UniProtKB/TrEMBL

VGNC

VGNC:31835 (MYOD1)