Danio rerio

Gene : tm4sf4 - ENSDARG00000040747 - Danio rerio (zebrafish)

General information

Gene identifier

ENSDARG00000040747

Name

tm4sf4

Description

transmembrane 4 L six family member 4 [Source:ZFIN;Acc:ZDB-GENE-040801-231]

Synonym(s)

zgc:92479

Orthologs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0000160intestine99.111.75e-14See source data
RSCAIE
UBERON:0002107liver95.39<= 1.00e-14See source data
RSCAIE
UBERON:0002548larva87.00<= 1.00e-14See source data
RSCAIE
UBERON:0007132head kidney82.624.22e-6See source data
RSCAIE
UBERON:0002106spleen79.636.21e-6See source data
RSCAIE
UBERON:2001076intestinal bulb61.744.00e-4See source data
RSCAIE
UBERON:0000955brain61.497.44e-4See source data
RSCAIE
UBERON:0006860swim bladder61.380.018See source data
RSCAIE
UBERON:0002415tail58.851.15e-9See source data
RSCAIE
UBERON:0001264pancreas57.774.00e-4See source data
RSCAIE
UBERON:0003922pancreatic epithelial bud55.524.00e-4See source data
RSCAIE
UBERON:0001474bone element52.195.77e-5See source data
RSCAIE
UBERON:0000033head46.832.03e-5See source data
RSCAIE
UBERON:0000206pharyngeal gill32.870.023See source data
RSCAIE
UBERON:0002199integument25.840.002See source data
RSCAIE
UBERON:0000014zone of skin25.450.002See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee
  • in situ hybridization data: ZFIN
  • RNA-Seq data: Bgee

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0000473testis10.510.252See source data
RSCAIE
UBERON:0000992ovary17.461See source data
RSCAIE
UBERON:0019248early embryo20.140.59See source data
RSCAIE
UBERON:0002385muscle tissue22.280.465See source data
RSCAIE
UBERON:0003982mature ovarian follicle23.471See source data
RSCAIE
UBERON:0000307blastula26.850.893See source data
RSCAIE
UBERON:0004734gastrula29.670.723See source data
RSCAIE
CL:0000094granulocyte33.800.076See source data
RSCAIE
UBERON:0000019camera-type eye36.270.987See source data
RSCAIE
UBERON:4000164caudal fin39.980.946See source data
RSCAIE
UBERON:0000966retina41.080.987See source data
RSCAIE
UBERON:0009620tail bud paraxial mesoderm41.800.978See source data
RSCAIE
UBERON:0007010cleaving embryo42.250.872See source data
RSCAIE
UBERON:0002082cardiac ventricle42.750.969See source data
RSCAIE
UBERON:0002329somite43.850.837See source data
RSCAIE
UBERON:0003059presomitic mesoderm44.140.989See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Otophysi

1 species

Astyanax mexicanus (Blind cave fish)

1 gene

Compare expression
Clupeocephala

10 species

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Teleostei

11 species

Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Neopterygii

12 species

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Euteleostomi

42 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)


Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Latimeria chalumnae (Coelacanth)

45 genes

Compare expression
Orthology information comes from OMA : ENSDARG00000040747.

Cross-references

Ensembl

ZFIN

UniProtKB/TrEMBL