Homo sapiens

Gene : LSM11 - ENSG00000155858 - Homo sapiens (human)

General information

Gene identifier

ENSG00000155858

Name

LSM11

Description

LSM11, U7 small nuclear RNA associated [Source:HGNC Symbol;Acc:HGNC:30860]

Synonym(s)

flj38273

Orthologs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
CL:0000655secondary oocyte95.300.002See source data
RSCAIE
CL:0000115endothelial cell94.850.004See source data
RSCAIE
UBERON:0013554Brodmann (1909) area 2394.320.002See source data
RSCAIE
UBERON:0002771middle temporal gyrus91.810.003See source data
RSCAIE
UBERON:0005343cortical plate90.945.51e-14See source data
RSCAIE
UBERON:0006483Brodmann (1909) area 4685.560.002See source data
RSCAIE
UBERON:0002661superior frontal gyrus84.913.24e-8See source data
RSCAIE
UBERON:0002581postcentral gyrus84.900.002See source data
RSCAIE
CL:0000670 in UBERON:0000991primordial germ cell in gonad84.571.94e-14See source data
RSCAIE
UBERON:0018303adrenal tissue84.421.17e-10See source data
RSCAIE
UBERON:0002728entorhinal cortex84.290.002See source data
RSCAIE
UBERON:0004720cerebellar vermis84.230.002See source data
RSCAIE
UBERON:0002436primary visual cortex83.878.24e-8See source data
RSCAIE
UBERON:0004360cauda epididymis82.680.002See source data
RSCAIE
UBERON:0002418cartilage tissue82.650.002See source data
RSCAIE
UBERON:0001385tibialis anterior80.790.011See source data
RSCAIE
CL:0000089 in UBERON:0000473male germ line stem cell (sensu Vertebrata) in testis80.691.39e-4See source data
RSCAIE
UBERON:0035833lower esophagus muscularis layer80.58<= 1.00e-14See source data
RSCAIE
UBERON:0004993mucosa of sigmoid colon79.250.003See source data
RSCAIE
UBERON:0001782pigmented layer of retina78.470.003See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee
  • EST data: Bgee
  • single-cell RNA-Seq data: Bgee
  • RNA-Seq data: Bgee

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0008188tendon of biceps brachii39.600.238See source data
RSCAIE
UBERON:0004502skeletal muscle tissue of biceps brachii40.270.105See source data
RSCAIE
UBERON:0015488sural nerve47.330.261See source data
RSCAIE
UBERON:0005384nasal cavity epithelium51.600.975See source data
RSCAIE
UBERON:0004263upper arm skin53.520.267See source data
RSCAIE
CL:0002336buccal mucosa cell53.680.182See source data
RSCAIE
UBERON:0005030mucosa of paranasal sinus57.880.137See source data
RSCAIE
UBERON:0003126trachea62.150.249See source data
RSCAIE
CL:0002092bone marrow cell62.580.107See source data
RSCAIE
UBERON:0002476lateral globus pallidus62.800.155See source data
RSCAIE
UBERON:0004087vena cava62.810.639See source data
RSCAIE
UBERON:0011876body of tongue62.910.573See source data
RSCAIE
UBERON:0002407pericardium63.150.267See source data
RSCAIE
UBERON:0004819kidney epithelium63.770.672See source data
RSCAIE
UBERON:0001951epithelium of nasopharynx64.390.131See source data
RSCAIE
UBERON:0006566left ventricle myocardium65.130.903See source data
RSCAIE
UBERON:0003379cardiac muscle of right atrium65.460.505See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Homininae

3 species

Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Compare expression
Catarrhini

9 species

Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Simiiformes

10 species

Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Euarchontoglires

14 species

Mus musculus (mouse)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Rattus norvegicus (rat)
Compare expression
Boreoeutheria

20 species

Mus musculus (mouse)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Compare expression
Theria

21 species

Mus musculus (mouse)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Mammalia

22 species

Mus musculus (mouse)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Amniota

23 species

Mus musculus (mouse)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Tetrapoda

25 species

Mus musculus (mouse)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Compare expression
Sarcopterygii

26 species

Mus musculus (mouse)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Latimeria chalumnae (Coelacanth)
Compare expression
Euteleostomi

39 species

Mus musculus (mouse)
Danio rerio (zebrafish)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Latimeria chalumnae (Coelacanth)

40 genes

Compare expression
Orthology information comes from OMA : ENSG00000155858.

Cross-references

CCDS

CCDS4342 (CCDS4342.1)

Ensembl

HGNC

HGNC:30860 (LSM11)

UniProtKB/Swiss-Prot