Gene : FAM78B - ENSG00000188859 - Homo sapiens (human)
General information
Gene identifier
ENSG00000188859
Name
FAM78B
Description
family with sequence similarity 78 member B [Source:HGNC Symbol;Acc:HGNC:13495]
Organism
Synonym(s)
Orthologs
Paralogs
Expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| CL:0000115endothelial cell | 88.62 | 0.005 | See source data | |
| UBERON:0013554Brodmann (1909) area 23 | 82.00 | 0.005 | See source data | |
| UBERON:0005343cortical plate | 81.23 | 7.12e-11 | See source data | |
| UBERON:0002436primary visual cortex | 80.20 | 1.15e-8 | See source data | |
| CL:0000089 in UBERON:0000473male germ line stem cell (sensu Vertebrata) in testis | 79.87 | 2.59e-4 | See source data | |
| UBERON:0002771middle temporal gyrus | 78.53 | 0.007 | See source data | |
| UBERON:0000451prefrontal cortex | 77.58 | 6.40e-12 | See source data | |
| UBERON:0014890right hemisphere of cerebellum | 77.43 | 1.24e-7 | See source data | |
| UBERON:0001388gastrocnemius | 76.24 | 1.68e-11 | See source data | |
| UBERON:0002810right frontal lobe | 75.46 | 4.38e-11 | See source data | |
| UBERON:0009834dorsolateral prefrontal cortex | 75.09 | 4.50e-9 | See source data | |
| UBERON:0013540Brodmann (1909) area 9 | 74.69 | 2.63e-8 | See source data | |
| UBERON:0003027cingulate cortex | 74.39 | 5.73e-9 | See source data | |
| UBERON:0009835anterior cingulate cortex | 74.39 | 5.73e-9 | See source data | |
| UBERON:0002661superior frontal gyrus | 73.25 | 2.19e-8 | See source data | |
| UBERON:0001882nucleus accumbens | 72.89 | 3.30e-8 | See source data | |
| UBERON:0004252hindlimb stylopod muscle | 72.84 | 9.54e-8 | See source data | |
| UBERON:0002581postcentral gyrus | 72.33 | 0.003 | See source data | |
| CL:0000670 in UBERON:0000991primordial germ cell in gonad | 72.17 | 1.73e-4 | See source data | |
| UBERON:0002728entorhinal cortex | 70.52 | 0.005 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of annotations to anatomy and development:
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- single-cell RNA-Seq data: SRA
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Reported absence of expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| CL:0000576monocyte | 35.01 | 0.988 | See source data | |
| UBERON:0018303adrenal tissue | 38.31 | 0.107 | See source data | |
| UBERON:0004360cauda epididymis | 38.74 | 0.893 | See source data | |
| UBERON:0004358caput epididymis | 38.75 | 0.954 | See source data | |
| UBERON:0000998seminal vesicle | 38.75 | 0.605 | See source data | |
| UBERON:0004359corpus epididymis | 38.98 | 0.962 | See source data | |
| CL:0000094granulocyte | 39.54 | 0.165 | See source data | |
| UBERON:0002450decidua | 39.65 | 0.954 | See source data | |
| UBERON:0002080heart right ventricle | 39.79 | 0.801 | See source data | |
| CL:0002255stromal cell of endometrium | 40.12 | 0.13 | See source data | |
| UBERON:0004993mucosa of sigmoid colon | 40.18 | 0.91 | See source data | |
| UBERON:0000399jejunal mucosa | 40.59 | 0.703 | See source data | |
| UBERON:0001831parotid gland | 41.03 | 0.975 | See source data | |
| UBERON:0001812palpebral conjunctiva | 41.10 | 0.846 | See source data | |
| UBERON:0002483trabecular bone tissue | 41.41 | 0.923 | See source data | |
| CL:0000655secondary oocyte | 42.57 | 0.297 | See source data | |
| UBERON:0002477medial globus pallidus | 44.10 | 0.887 | See source data | |
| UBERON:0004502skeletal muscle tissue of biceps brachii | 44.65 | 0.945 | See source data | |
| UBERON:0002371bone marrow | 44.69 | 1 | See source data | |
| CL:0002092bone marrow cell | 45.68 | 0.377 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Orthologs
Taxon Name | Species with orthologs | Gene(s) | Expression comparison | See details |
|---|---|---|---|---|
| Homininae | 3 species | 3 genes | Compare expression | |
| Catarrhini | 9 species | 9 genes | Compare expression | |
| Simiiformes | 10 species | 10 genes | Compare expression | |
| Euarchontoglires | 13 species | 13 genes | Compare expression | |
| Boreoeutheria | 21 species | 21 genes | Compare expression | |
| Theria | 22 species | 22 genes | Compare expression | |
| Mammalia | 23 species | 23 genes | Compare expression | |
| Amniota | 25 species | 25 genes | Compare expression | |
| Tetrapoda | 27 species | 28 genes | Compare expression | |
| Sarcopterygii | 28 species | 29 genes | Compare expression | |
| Euteleostomi | 42 species | 45 genes | Compare expression | |
| Chordata | 43 species | 46 genes | Compare expression |
Paralogs (same species)
Taxon Name | Gene(s) | Expression comparison | See details |
|---|---|---|---|
| Gnathostomata | 1 gene | Compare expression |
Cross-references
CCDS
Ensembl
HGNC
EMBL
GeneCards
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL