Salmo salar

Gene : LTBP4 - ENSSSAG00000005690 - Salmo salar (Atlantic salmon)

General information

Gene identifier

ENSSSAG00000005690

Name

LTBP4

Description

latent-transforming growth factor beta-binding protein 4-like [Source:NCBI gene;Acc:106612711]

Synonym(s)

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002328notochord95.212.18e-10See source data
RSCAIE
UBERON:0000948heart90.634.07e-7See source data
RSCAIE
UBERON:0006866terminal part of digestive tract81.145.30e-6See source data
RSCAIE
UBERON:0000206pharyngeal gill78.775.30e-6See source data
RSCAIE
UBERON:0000473testis74.874.89e-7See source data
RSCAIE
UBERON:0000014zone of skin73.636.31e-7See source data
RSCAIE
UBERON:0006908fast muscle tissue72.286.01e-4See source data
RSCAIE
UBERON:0007132head kidney72.267.33e-5See source data
RSCAIE
UBERON:0001045midgut65.450.001See source data
RSCAIE
UBERON:0001046hindgut62.095.06e-4See source data
RSCAIE
UBERON:0002107liver61.810.005See source data
RSCAIE
UBERON:0007021sexually immature organism60.323.64e-6See source data
RSCAIE
UBERON:0000080mesonephros59.883.81e-4See source data
RSCAIE
UBERON:0000004nose57.378.04e-5See source data
RSCAIE
UBERON:4300174actinopterygian pyloric caecum56.600.009See source data
RSCAIE
UBERON:0000970eye56.180.001See source data
RSCAIE
UBERON:2005272immature gonad55.335.39e-5See source data
RSCAIE
UBERON:0000019camera-type eye53.540.004See source data
RSCAIE
UBERON:0009120gill filament53.470.001See source data
RSCAIE
UBERON:0005870olfactory pit51.704.30e-4See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0000007pituitary gland27.720.32See source data
RSCAIE
UBERON:0001968semen35.830.461See source data
RSCAIE
UBERON:0000992ovary37.050.077See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Protacanthopterygii

1 species

Esox lucius (Northern pike)

1 gene

Compare expression
Euteleosteomorpha

5 species

Esox lucius (Northern pike)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Compare expression
Clupeocephala

7 species

Danio rerio (zebrafish)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Compare expression
Neopterygii

8 species

Danio rerio (zebrafish)
Lepisosteus oculatus (Spotted gar)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Compare expression
Euteleostomi

36 species

Homo sapiens (human)
Mus musculus (mouse)
Danio rerio (zebrafish)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)

Macaca fascicularis (Crab-eating macaque)

Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)

Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)

Pan troglodytes (chimpanzee)

Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Lepisosteus oculatus (Spotted gar)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Latimeria chalumnae (Coelacanth)

41 genes

Compare expression
Orthology information comes from OMA : ENSSSAG00000005690.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
Salmo

1 gene

Compare expression
Paralogy information comes from OMA : ENSSSAG00000005690.