Bos taurus

Gene : VPS52 - ENSBTAG00000002643 - Bos taurus (cattle)

General information

Gene identifier

ENSBTAG00000002643

Name

VPS52

Description

VPS52 subunit of GARP complex [Source:VGNC Symbol;Acc:VGNC:36828]

Synonym(s)

Orthologs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002198neurohypophysis92.245.82e-11See source data
RSCAIE
UBERON:0001044saliva-secreting gland91.941.31e-11See source data
RSCAIE
UBERON:0002196adenohypophysis91.743.38e-11See source data
RSCAIE
UBERON:0015869retropharyngeal lymph node91.394.93e-12See source data
RSCAIE
UBERON:0000966retina91.098.89e-11See source data
RSCAIE
UBERON:0001255urinary bladder90.894.67e-14See source data
RSCAIE
UBERON:0004703dorsal thalamus90.664.83e-10See source data
RSCAIE
UBERON:0002247uterine horn90.536.89e-11See source data
RSCAIE
UBERON:0003309floor plate of diencephalon90.512.00e-10See source data
RSCAIE
UBERON:0007358abomasum90.371.00e-9See source data
RSCAIE
UBERON:0001954Ammon's horn90.352.91e-9See source data
RSCAIE
UBERON:0001891midbrain90.001.78e-10See source data
RSCAIE
UBERON:0000451prefrontal cortex89.697.92e-11See source data
RSCAIE
UBERON:0016538temporal cortex89.568.26e-11See source data
RSCAIE
UBERON:0002509mesenteric lymph node89.281.17e-7See source data
RSCAIE
UBERON:0001739laryngeal cartilage89.171.56e-11See source data
RSCAIE
UBERON:0001043esophagus89.061.68e-12See source data
RSCAIE
UBERON:0001898hypothalamus89.051.96e-10See source data
RSCAIE
UBERON:0002046thyroid gland88.951.01e-10See source data
RSCAIE
UBERON:0036245parenchyma of mammary gland88.861.40e-12See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0001968semen69.990.063See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Bovidae

2 species

Capra hircus (Goat)
Ovis aries (Sheep)
Compare expression
Artiodactyla

3 species

Compare expression
Laurasiatheria

7 species

Compare expression
Boreoeutheria

22 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Compare expression
Theria

23 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Amniota

24 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Anolis carolinensis (green anole)
Compare expression
Tetrapoda

26 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Compare expression
Sarcopterygii

27 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Latimeria chalumnae (Coelacanth)
Compare expression
Euteleostomi

38 species

Homo sapiens (human)
Mus musculus (mouse)
Danio rerio (zebrafish)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Latimeria chalumnae (Coelacanth)

39 genes

Compare expression
Chordata

39 species

Homo sapiens (human)
Mus musculus (mouse)
Danio rerio (zebrafish)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Branchiostoma lanceolatum (Common lancelet)
Latimeria chalumnae (Coelacanth)

40 genes

Compare expression
Bilateria

43 species

Homo sapiens (human)
Mus musculus (mouse)
Danio rerio (zebrafish)
Drosophila melanogaster (fruit fly)
Caenorhabditis elegans (nematode)
Canis lupus familiaris (dog)
Felis catus (cat)

Equus caballus (horse)
Sus scrofa (pig)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Branchiostoma lanceolatum (Common lancelet)
Latimeria chalumnae (Coelacanth)
Drosophila pseudoobscura ()
Drosophila simulans ()

44 genes

Compare expression
Orthology information comes from OMA : ENSBTAG00000002643.

Cross-references