Danio rerio

Gene : atp5f1d - ENSDARG00000019404 - Danio rerio (zebrafish)

General information

Gene identifier

ENSDARG00000019404

Name

atp5f1d

Description

ATP synthase F1 subunit delta [Source:ZFIN;Acc:ZDB-GENE-030131-7649]

Synonym(s)

fk58f09,zgc:73303,atp5d,wu:fk58f09

Orthologs

Expression

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entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002385muscle tissue99.05<= 1.00e-14See source data
RSCAIE
UBERON:0002082cardiac ventricle98.812.19e-4See source data
RSCAIE
UBERON:0001474bone element98.65<= 1.00e-14See source data
RSCAIE
UBERON:0000160intestine98.241.16e-11See source data
RSCAIE
UBERON:0000014zone of skin97.981.66e-12See source data
RSCAIE
UBERON:0000206pharyngeal gill97.862.68e-11See source data
RSCAIE
UBERON:0002548larva97.52<= 1.00e-14See source data
RSCAIE
CL:0000094granulocyte97.285.08e-10See source data
RSCAIE
UBERON:0002107liver96.941.35e-10See source data
RSCAIE
UBERON:0002106spleen95.832.38e-9See source data
RSCAIE
UBERON:0000033head95.365.94e-11See source data
RSCAIE
UBERON:0000019camera-type eye94.407.80e-11See source data
RSCAIE
UBERON:0000473testis94.078.28e-9See source data
RSCAIE
UBERON:0000992ovary93.532.22e-10See source data
RSCAIE
UBERON:0002329somite93.272.19e-4See source data
RSCAIE
UBERON:0000966retina92.772.86e-4See source data
RSCAIE
UBERON:0000955brain92.043.05e-9See source data
RSCAIE
UBERON:0019248early embryo91.772.27e-9See source data
RSCAIE
UBERON:0003982mature ovarian follicle91.191.62e-7See source data
RSCAIE
UBERON:0004734gastrula89.825.16e-12See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee
  • EST data: Bgee
  • in situ hybridization data: ZFIN
  • RNA-Seq data: Bgee

Sources of raw data:

Reported absence of expression

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entries

No reported absence of expression for this gene

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Otophysi

1 species

Astyanax mexicanus (Blind cave fish)

1 gene

Compare expression
Clupeocephala

10 species

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Teleostei

11 species

Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Neopterygii

12 species

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Euteleostomi

39 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Latimeria chalumnae (Coelacanth)

42 genes

Compare expression
Bilateria

43 species

Homo sapiens (human)
Mus musculus (mouse)
Drosophila melanogaster (fruit fly)
Caenorhabditis elegans (nematode)
Canis lupus familiaris (dog)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Latimeria chalumnae (Coelacanth)
Drosophila pseudoobscura ()
Drosophila simulans ()

46 genes

Compare expression
Orthology information comes from OMA : ENSDARG00000019404.

Cross-references

Ensembl

ZFIN

UniProtKB/TrEMBL