Danio rerio

Gene : depdc5 - ENSDARG00000078105 - Danio rerio (zebrafish)

General information

Gene identifier

ENSDARG00000078105

Name

depdc5

Description

DEP domain containing 5, GATOR1 subcomplex subunit [Source:ZFIN;Acc:ZDB-GENE-091204-356]

Synonym(s)

si:dkey-106l3.5

Orthologs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002106spleen89.102.85e-7See source data
RSCAIE
UBERON:0002385muscle tissue87.215.54e-7See source data
RSCAIE
UBERON:0001474bone element85.421.17e-8See source data
RSCAIE
UBERON:0000473testis84.853.15e-7See source data
RSCAIE
CL:0000094granulocyte84.252.48e-6See source data
RSCAIE
UBERON:0000206pharyngeal gill84.151.25e-6See source data
RSCAIE
UBERON:0000948heart83.993.73e-6See source data
RSCAIE
UBERON:0002107liver81.694.63e-5See source data
RSCAIE
UBERON:0002329somite80.834.38e-4See source data
RSCAIE
UBERON:0002199integument80.339.15e-6See source data
RSCAIE
UBERON:0000014zone of skin80.268.39e-6See source data
RSCAIE
UBERON:0000955brain80.234.70e-5See source data
RSCAIE
UBERON:0000160intestine80.029.54e-6See source data
RSCAIE
UBERON:0002082cardiac ventricle79.150.044See source data
RSCAIE
UBERON:0003059presomitic mesoderm78.577.47e-4See source data
RSCAIE
UBERON:0009620tail bud paraxial mesoderm78.464.82e-4See source data
RSCAIE
UBERON:0000033head78.413.28e-5See source data
RSCAIE
UBERON:0000019camera-type eye77.143.15e-5See source data
RSCAIE
UBERON:0002548larva76.211.73e-7See source data
RSCAIE
UBERON:0000966retina74.500.002See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee
  • in situ hybridization data: ZFIN
  • RNA-Seq data: Bgee

Sources of raw data:

Reported absence of expression

Show

entries

No reported absence of expression for this gene

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Otophysi

1 species

Astyanax mexicanus (Blind cave fish)

1 gene

Compare expression
Clupeocephala

7 species

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Compare expression
Teleostei

8 species

Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Compare expression
Euteleostomi

38 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)

Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Xenopus tropicalis (western clawed frog)

Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Latimeria chalumnae (Coelacanth)

41 genes

Compare expression
Bilateria

42 species

Homo sapiens (human)
Mus musculus (mouse)
Drosophila melanogaster (fruit fly)
Caenorhabditis elegans (nematode)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)

Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Xenopus tropicalis (western clawed frog)

Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Latimeria chalumnae (Coelacanth)
Drosophila pseudoobscura ()
Drosophila simulans ()

45 genes

Compare expression
Orthology information comes from OMA : ENSDARG00000078105.