Gene : SGCD - ENSG00000170624 - Homo sapiens (human)
General information
Gene identifier
ENSG00000170624
Name
SGCD
Description
sarcoglycan delta [Source:HGNC Symbol;Acc:HGNC:10807]
Organism
Synonym(s)
Orthologs
Paralogs
Expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| UBERON:0006566left ventricle myocardium | 96.24 | 0.002 | See source data | |
| UBERON:0004511skeletal muscle tissue of rectus abdominis | 95.97 | 0.002 | See source data | |
| UBERON:0002080heart right ventricle | 95.06 | 0.002 | See source data | |
| UBERON:0004502skeletal muscle tissue of biceps brachii | 93.81 | 0.002 | See source data | |
| UBERON:0001379vastus lateralis | 93.72 | 0.005 | See source data | |
| UBERON:0003379cardiac muscle of right atrium | 93.21 | 0.003 | See source data | |
| UBERON:0001476deltoid | 91.76 | 0.01 | See source data | |
| UBERON:0007318saphenous vein | 91.37 | 0.002 | See source data | |
| UBERON:0002000gluteal muscle | 91.21 | 0.005 | See source data | |
| UBERON:0001385tibialis anterior | 90.61 | 0.01 | See source data | |
| CL:0002336buccal mucosa cell | 89.42 | 0.003 | See source data | |
| UBERON:0001509triceps brachii | 89.28 | 0.013 | See source data | |
| UBERON:0011876body of tongue | 88.99 | 0.003 | See source data | |
| UBERON:0004252hindlimb stylopod muscle | 88.96 | <= 1.00e-14 | See source data | |
| UBERON:0001103diaphragm | 88.42 | 0.006 | See source data | |
| UBERON:0006631right atrium auricular region | 88.25 | <= 1.00e-14 | See source data | |
| UBERON:0001388gastrocnemius | 88.06 | <= 1.00e-14 | See source data | |
| UBERON:0007610tibial artery | 87.28 | <= 1.00e-14 | See source data | |
| UBERON:0001675trigeminal ganglion | 86.98 | 0.002 | See source data | |
| UBERON:0004797blood vessel layer | 86.62 | 0.002 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of annotations to anatomy and development:
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- single-cell RNA-Seq data: SRA
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Reported absence of expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| CL:0002255stromal cell of endometrium | 38.61 | 1 | See source data | |
| CL:0000576monocyte | 39.39 | 0.14 | See source data | |
| UBERON:0001951epithelium of nasopharynx | 43.17 | 0.571 | See source data | |
| UBERON:0000173amniotic fluid | 43.58 | 0.733 | See source data | |
| UBERON:0006919tongue squamous epithelium | 47.92 | 0.535 | See source data | |
| UBERON:0006922cervix squamous epithelium | 52.08 | 0.164 | See source data | |
| CL:0002092bone marrow cell | 53.67 | 0.766 | See source data | |
| UBERON:0004263upper arm skin | 56.09 | 0.309 | See source data | |
| UBERON:0006920esophagus squamous epithelium | 56.88 | 0.804 | See source data | |
| UBERON:0001231nephron tubule | 57.06 | 0.41 | See source data | |
| UBERON:0005030mucosa of paranasal sinus | 57.16 | 0.074 | See source data | |
| UBERON:0001812palpebral conjunctiva | 58.07 | 0.73 | See source data | |
| UBERON:0000074renal glomerulus | 58.19 | 0.151 | See source data | |
| UBERON:0004736metanephric glomerulus | 58.26 | 0.164 | See source data | |
| UBERON:0000331ileal mucosa | 62.20 | 0.1 | See source data | |
| UBERON:0001949gingival epithelium | 62.43 | 0.857 | See source data | |
| UBERON:0005384nasal cavity epithelium | 63.56 | 0.878 | See source data | |
| CL:0000019sperm | 63.94 | 0.204 | See source data | |
| UBERON:0000362renal medulla | 64.12 | 0.143 | See source data | |
| UBERON:0003911choroid plexus epithelium | 65.01 | 0.051 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Orthologs
Taxon Name | Species with orthologs | Gene(s) | Expression comparison | See details |
|---|---|---|---|---|
| Homininae | 3 species | 3 genes | Compare expression | |
| Catarrhini | 9 species | 9 genes | Compare expression | |
| Simiiformes | 10 species | 10 genes | Compare expression | |
| Primates | 11 species | 11 genes | Compare expression | |
| Euarchontoglires | 15 species | 15 genes | Compare expression | |
| Boreoeutheria | 23 species | 23 genes | Compare expression | |
| Theria | 24 species | 24 genes | Compare expression | |
| Mammalia | 25 species | 25 genes | Compare expression | |
| Amniota | 27 species | 27 genes | Compare expression | |
| Tetrapoda | 29 species | 29 genes | Compare expression | |
| Euteleostomi | 41 species | 43 genes | Compare expression | |
| Bilateria | 45 species | 47 genes | Compare expression |
Paralogs (same species)
Taxon Name | Gene(s) | Expression comparison | See details |
|---|---|---|---|
| Chordata | 1 gene | Compare expression | |
| Deuterostomia | 2 genes | Compare expression |
Cross-references
CCDS
Ensembl
HGNC
EMBL
GeneCards
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL