phb expression in Atlantic cod

Anat. entity and cell typesDev. stageSexStrain

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Anatomical entity	Expression score	FDR	Link to source data	Sources
CL:0000365animal zygote	97.80	8.78e-8	See source data	RSCAIE
UBERON:0000922embryo	97.38	6.42e-9	See source data	RSCAIE
UBERON:0001555digestive tract	97.24	1.82e-7	See source data	RSCAIE
UBERON:0002548larva	97.14	6.34e-9	See source data	RSCAIE
UBERON:0000473testis	97.12	3.95e-7	See source data	RSCAIE
UBERON:0000948heart	96.83	2.63e-6	See source data	RSCAIE
UBERON:0002385muscle tissue	96.78	5.12e-8	See source data	RSCAIE
UBERON:0002107liver	96.73	1.07e-6	See source data	RSCAIE
UBERON:0007021sexually immature organism	96.26	1.08e-8	See source data	RSCAIE
UBERON:0000992ovary	96.08	8.63e-8	See source data	RSCAIE
UBERON:0007132head kidney	95.65	2.61e-6	See source data	RSCAIE
UBERON:0000206pharyngeal gill	95.62	1.20e-5	See source data	RSCAIE
UBERON:0001474bone element	95.60	1.34e-6	See source data	RSCAIE
UBERON:0000955brain	95.25	1.97e-5	See source data	RSCAIE
UBERON:0005057immune organ	94.34	9.40e-7	See source data	RSCAIE

Showing 1 to 15 of 15 entries

Sources

A Affimetrix

E EST

I In Situ

R RNA-Seq

SC scRNA-Seq

datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO, SRA

Orthologs

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Taxon Name	Species with orthologs	Gene(s)	Expression comparison
Acanthomorphata	7 species Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	7 genes ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB	Compare expression
Euteleosteomorpha	9 species Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	10 genes ENSELUG00000017268 phb ENSSSAG00000000287 phb ENSSSAG00000067100 phb ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB	Compare expression
Clupeocephala	10 species Danio rerio (zebrafish) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	11 genes ENSDARG00000057414 phb ENSELUG00000017268 phb ENSSSAG00000000287 phb ENSSSAG00000067100 phb ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB	Compare expression
Teleostei	11 species Danio rerio (zebrafish) Anguilla anguilla (European freshwater eel) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	13 genes ENSDARG00000057414 phb 118215935 LOC118215935 118221824 LOC118221824 ENSELUG00000017268 phb ENSSSAG00000000287 phb ENSSSAG00000067100 phb ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB	Compare expression
Neopterygii	12 species Danio rerio (zebrafish) Lepisosteus oculatus (Spotted gar) Anguilla anguilla (European freshwater eel) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	14 genes ENSDARG00000057414 phb ENSLOCG00000011441 phb 118215935 LOC118215935 118221824 LOC118221824 ENSELUG00000017268 phb ENSSSAG00000000287 phb ENSSSAG00000067100 phb ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB	Compare expression
Euteleostomi	43 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Anguilla anguilla (European freshwater eel) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Latimeria chalumnae (Coelacanth)	48 genes ENSG00000167085 PHB ENSMUSG00000038845 Phb ENSDARG00000057414 phb ENSCAFG00000016926 PHB ENSFCAG00000042904 PHB ENSECAG00000017769 PHB ENSSSCG00000017549 PHB ENSBTAG00000017120 PHB ENSCHIG00000012405 PHB ENSOARG00000006032 PHB ENSOCUG00000007209 ENSCPOG00000000430 PHB ENSGALG00000038604 PHB ENSMGAG00000002414 PHB ENSOANG00000003080 PHB ENSCJAG00000007174 PHB ENSCATG00000032527 ENSCATG00000044390 ENSMFAG00000042554 PHB ENSMMUG00000000156 PHB ENSMNEG00000030128 ENSPANG00000022828 PHB ENSGGOG00000028002 PHB ENSPPAG00000026668 PHB ENSPTRG00000009376 PHB ENSCSAG00000002455 108391064 PHB ENSRNOG00000046799 Phb ENSRNOG00000060310 LOC688815 ENSMODG00000012210 PHB 379173 phb.L 379509 phb.S ENSXETG00000027802 phb ENSACAG00000004797 PHB ENSLOCG00000011441 phb 118215935 LOC118215935 118221824 LOC118221824 ENSELUG00000017268 phb ENSSSAG00000000287 phb ENSSSAG00000067100 phb ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB ENSLACG00000006091 PHB	Compare expression
Chordata	44 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Anguilla anguilla (European freshwater eel) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Branchiostoma lanceolatum (Common lancelet) Latimeria chalumnae (Coelacanth)	49 genes ENSG00000167085 PHB ENSMUSG00000038845 Phb ENSDARG00000057414 phb ENSCAFG00000016926 PHB ENSFCAG00000042904 PHB ENSECAG00000017769 PHB ENSSSCG00000017549 PHB ENSBTAG00000017120 PHB ENSCHIG00000012405 PHB ENSOARG00000006032 PHB ENSOCUG00000007209 ENSCPOG00000000430 PHB ENSGALG00000038604 PHB ENSMGAG00000002414 PHB ENSOANG00000003080 PHB ENSCJAG00000007174 PHB ENSCATG00000032527 ENSCATG00000044390 ENSMFAG00000042554 PHB ENSMMUG00000000156 PHB ENSMNEG00000030128 ENSPANG00000022828 PHB ENSGGOG00000028002 PHB ENSPPAG00000026668 PHB ENSPTRG00000009376 PHB ENSCSAG00000002455 108391064 PHB ENSRNOG00000046799 Phb ENSRNOG00000060310 LOC688815 ENSMODG00000012210 PHB 379173 phb.L 379509 phb.S ENSXETG00000027802 phb ENSACAG00000004797 PHB ENSLOCG00000011441 phb 118215935 LOC118215935 118221824 LOC118221824 ENSELUG00000017268 phb ENSSSAG00000000287 phb ENSSSAG00000067100 phb ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB BL13879 PHB ENSLACG00000006091 PHB	Compare expression
Bilateria	48 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Anguilla anguilla (European freshwater eel) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Branchiostoma lanceolatum (Common lancelet) Latimeria chalumnae (Coelacanth) Drosophila pseudoobscura () Drosophila simulans ()	53 genes ENSG00000167085 PHB ENSMUSG00000038845 Phb ENSDARG00000057414 phb FBgn0002031 l(2)37Cc WBGene00004014 phb-1 ENSCAFG00000016926 PHB ENSFCAG00000042904 PHB ENSECAG00000017769 PHB ENSSSCG00000017549 PHB ENSBTAG00000017120 PHB ENSCHIG00000012405 PHB ENSOARG00000006032 PHB ENSOCUG00000007209 ENSCPOG00000000430 PHB ENSGALG00000038604 PHB ENSMGAG00000002414 PHB ENSOANG00000003080 PHB ENSCJAG00000007174 PHB ENSCATG00000032527 ENSCATG00000044390 ENSMFAG00000042554 PHB ENSMMUG00000000156 PHB ENSMNEG00000030128 ENSPANG00000022828 PHB ENSGGOG00000028002 PHB ENSPPAG00000026668 PHB ENSPTRG00000009376 PHB ENSCSAG00000002455 108391064 PHB ENSRNOG00000046799 Phb ENSRNOG00000060310 LOC688815 ENSMODG00000012210 PHB 379173 phb.L 379509 phb.S ENSXETG00000027802 phb ENSACAG00000004797 PHB ENSLOCG00000011441 phb 118215935 LOC118215935 118221824 LOC118221824 ENSELUG00000017268 phb ENSSSAG00000000287 phb ENSSSAG00000067100 phb ENSPREG00000008386 phb ENSORLG00000003148 phb ENSACLG00000001452 phb ENSNBRG00000020015 phb ENSSMAG00000010069 phb ENSGACG00000009106 phb ENSNFUG00015003064 PHB BL13879 PHB ENSLACG00000006091 PHB FBgn0070555 Dpse\GA10498 FBgn0193198 Dsim\GD21777	Compare expression

Showing 1 to 8 of 8 entries

Orthology information comes from OMA : ENSGMOG00000014224.

Gene : phb - ENSGMOG00000014224 - Gadus morhua (Atlantic cod)

General information

Expression

Reported absence of expression

Orthologs

Paralogs (same species)

Cross-references