Gasterosteus aculeatus

Gene : sgca - ENSGACG00000003356 - Gasterosteus aculeatus (Three-spined stickleback)

General information

Gene identifier

ENSGACG00000003356

Name

sgca

Description

sarcoglycan, alpha [Source:ZFIN;Acc:ZDB-GENE-041111-121]

Synonym(s)

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002385muscle tissue95.092.73e-5See source data
RSCAIE
UBERON:0000014zone of skin93.842.93e-4See source data
RSCAIE
UBERON:0000948heart83.980.001See source data
RSCAIE
UBERON:0000019camera-type eye46.100.014See source data
RSCAIE
UBERON:0000922embryo42.160.033See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002107liver23.010.368See source data
RSCAIE
UBERON:0001894diencephalon24.120.12See source data
RSCAIE
UBERON:0000473testis25.180.166See source data
RSCAIE
UBERON:0000206pharyngeal gill27.910.121See source data
RSCAIE
UBERON:0002106spleen28.830.378See source data
RSCAIE
UBERON:0001893telencephalon30.020.077See source data
RSCAIE
UBERON:0000080mesonephros31.840.144See source data
RSCAIE
UBERON:0007132head kidney37.060.173See source data
RSCAIE
CL:0002563intestinal epithelial cell37.170.152See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Percomorphaceae

5 species

Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Acanthomorphata

6 species

Gadus morhua (Atlantic cod)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Euteleosteomorpha

8 species

Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Teleostei

9 species

Anguilla anguilla (European freshwater eel)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Neopterygii

10 species

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Euteleostomi

35 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Anolis carolinensis (green anole)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Orthology information comes from OMA : ENSGACG00000003356.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
ChordataCompare expression
Paralogy information comes from OMA : ENSGACG00000003356.

Cross-references

Ensembl

UniProtKB/TrEMBL